Thank you for your inquiry. When clearing chakras, I like to use a Clear Quartz pendulum.
You hold thependulum over the chakra (approximately 6 inches above the chakra) and let it spin. If it spins counter clockwise or if it goes side to side, the pendulum is cleaning the chakra. If it goes clockwise or up and down it is putting energy in.
After cleaning the chakra, I would place one crystal on the energy center. Since you received the Healer Special Chakra Setand it has 3 crystals per chakra, you can keep alternating them each time you them. I would suggest cleaning the chakras at least once a week. If you are using Doreen Virtues' Chakra Clearing cd you can leave the crystals in place while using the meditation.
I hope that these recommendations can be of assistance and that crystals grace your journey with love and light.
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*Disclaimer – Crystals are not a medical treatment and should not be used as a replacement for medical care. Please consult your healthcare specialist for your particular needs.